So far I can only see this listed on the Canadian Walmart online shop, which is offering it with the 3D bluray, bluray, and DVD releases of Into Darkness, as well as a bluray two-pack with both Into Darkness and the 2009 film.
Amazon in the UK are also offering an Into Darkness/Star Trek two-pack, on either bluray or DVD.
The other exclusive edition of Into Darkness so far announced is Amazon's version which comes with a QMx phaser replica. TrekCore have released some photos showing off the prop from more angles:
There are more photos on TrekCore. So far Amazon.com and Amazon.fr are offering the phaser exclusive, the latter with the bluray in steelbook packaging.